Plot profile object — plot.prof • SAMtool

Generates a profile plot generated by profile. If a two-parameter profile is performed, then a contour plot of the likelihood surface is returned.

Usage

# S4 method for class 'prof,missing'
plot(x, contour_levels = 20, ...)

Arguments

x: An object of class prof returned by profile.
contour_levels: Integer, passed to nlevels argument of contour.
...: Miscellaneous. Not used.

Value

A likelihood profile plot, either a one-dimensional line plot or a two-dimensional contour plot.

Author

Q. Huynh